Software4Labs have been working with Proteome software for over 10 years to provide Mass Spectrometry analysis tools for the identification, quantitation and phosporylation sites of proteins and for for small molecule Metabolomic studies.

Proteome Software is committed to setting the industry standard in MS/MS Bioinformatics analysis with theirSoftware Suites.


Proteomics is the large-scale study of proteomes. A proteome is a set of proteins produced in an organism, system, or biological context. We may refer to, for instance, the proteome of a species (for example, Homo sapiens) or an organ (for example, the liver).The proteome is not constant; it differs from cell to cell and changes over time.

Proteome software have developed identification, quantitation and phosporylation sites of proteins:

Quickly visualize and validate MS/MS protein search results.
Scaffold LFQ: Analysis and organisation of large scale proteomics experiments.

Q+S: Quantitate multiple iTRAQ & TMT experiments effortlessly.

Phosphorylation sites
PTM: Confident Post Translational Modification (PTM) site assignment.Metabolomics


Metabolomics is the large-scale study of small molecules, commonly known as metabolites, within cells, biofluids, tissues or organisms. Collectively, these small molecules and their interactions within a biological system are known as the metabolome.Metabolomics is a powerful approach because metabolites and their concentrations, unlike other “omics” measures, directly reflect the underlying biochemical activity and state of cells / tissues. Thus metabolomics best represents the molecular phenotype.

Elements: Flexible analysis of Metabolomics experiments


Automation: Scaffold can be written into your analysis pipelines using its command-line interface.